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Details




NbTI12E02

Annotation
Solyc12g017910.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch12 gene_region:7757083-7763435 transcript_region:SL2.50ch12:7757083..7763435- functional_description:"Potassium transporter (AHRD V1 **** Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "
ref|XP_009620408.1|;PREDICTED: potassium transporter 4-like [Nicotiana tomentosiformis]
NbS00000992g0008.1;protein AED:0.29 eAED:0.29 QI:205|0.72|0.83|1|0.54|0.41|12|0|816; (*GB) gi|255543489|ref|XP_002512807.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q942X8|HAK2_ORYSJ (e_value=0.0) Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=0.0) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc12g017910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7757083-7763435 transcript_region:SL2.40ch12:7757083..7763435- functional_description:"Potassium transporter (AHRD V1 **** Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter ";
AT3G02050.1;| Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789
GO ID (Nr annotation)
GO:0016020 GO:0015079 GO:0071805
GO ID (Arabidopsis annotation)
GO:0016020 GO:0015079 GO:0071805
GO ID (Tomato annotation)
GO:0016020 GO:0015079 GO:0071805
GO ID (Niben annotation)
GO:0016020 GO:0015079 GO:0071805
Sequence
>NbTI12E02
GATGGGGACGAGGAATCAATCCATGCAGTTGGACAAGAAGGGATGGGTCAACAAACCCATCTTGAGAGGAGAAAAGGGAAATTGGCTTCCAAGTTTACTC
TGGTGAATATTTCCACTAATCTACTATTGGCATACCAAAGTCTGGGGGTGGTATATGGAGATGTGAGCACTTCTCCGCTTTATGTCTATAGGAGCATCTT
TGTGGGGAAGTTGCAAAATCATCAGAATTCAGAAGCGATATTTGGTGCATTTTCACTGATCTTCTGGACAATAACGTTCATTCCTCTGCTCAAATATGTG
TTCGTTGTATTAAGTGCAGATGATAATGGTGAAGGTGGTACATTCGCTCTTTACTCTCTGCTATGTAGACACGCAAAGTTTAGTCTACTTCCCAACCAAC
AGGCAGCAGATGAGGAGCTATCTGCTTACAAATATGGCTTCTCCGGGCAGTCGACAGCATGTTTATCATTGAAGAGATTTCTTGAGAAGCATAAGAAGTC
ACGCACAGTACTGCTTATTGTTGTATTGTTGGGTGCTTGTATGGTAATAGGAGATGGTGTTCTGACTCCTGCAATGTCAGTTATATCATCAATATCAGGG
ATCCAGGCTGCTACTGAACATCTATCTCATGGTGTTGTGCTACTTCTGTCTTGCATAATATTGGTTGGCCTGTTTGCTCTACAGCATTCTGGAACCCAAA
GGGTTGGGATTCTTTGTTTGCACCCTATAGTGACTATTTGGTTGATATC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit