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Details




NbTI13B01

Annotation
Solyc06g071370.1.1;evidence_code:10F1H0E1IEG genomic_reference:SL2.50ch06 gene_region:40310549-40311019 transcript_region:SL2.50ch06:40310549..40311019- functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"
ref|XP_009760553.1|;PREDICTED: uncharacterized protein LOC104212884 [Nicotiana sylvestris]
NbS00004084g0001.1;protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-54) IS10 transposase, putative [Solanum lycopersicum];; (*TAIR) AT5G62865.1 (e_value=2e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD LENGTH=167;; (*ITAG) Solyc06g071370.1.1 (e_value=1e-64) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:40310549-40311019 transcript_region:SL2.40ch06:40310549..40311019- functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)";
AT5G62865.1;| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD LENGTH=167
GO ID (Nr annotation)
GO:0003677 GO:0004803 GO:0006313
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005576 GO:0005829 GO:0016459 GO:0031982 GO:0005488 GO:0008234 GO:0008307 GO:0016491 GO:0030898 GO:0006508 GO:0006796 GO:0019637
Sequence
>NbTI13B01
CTTCCATTACATCATTTCCCACCAATAACTCCATCACCCAAAATTCTACTAGTAGTAAAGTGCCTTCAAATACATATATACTCGATCTATAAATGCATTA
TCGTTATGGCCTCTTCTGAATCTTCGTCCGCATATTCATATGCAGAGCCAAGTAACGAGAATTCGTTAAACAAGCGGCGGCGGCGTTTCTGCTTCCCATC
TTTCAGTTCTACAAATCAATTAACAAGGCGTGTTAACTTGGAGTGGTGGCATAAGATACGCAGCGGCGCGGTCAAGGAAGGGTCTGTATGGGCCAAAGGA
ATCAACGCTCTAAAGAAGCTTCGAGAATGGTCGGAGATCGTAGCCGGACCAAGATGGAAGACTTTCATCCGACGGTTCAATCGGAACAAAAGCGGGAGAA
ATGCGAAATTCCAATATGACCCTCTGAGTTACTCACTCAACTTCGATGAAGGGCCTGGGAATAACAAAGAGGAGGAAGAAGAGTATGTGCTGCGGAATTT
CTCCACGAGATACGCCTCAGCTTCAATTTCAGCACCTGCTAAGGCATCCATGGACCTCGGCAAAGATGGGCCCAGTTTCGTTTGAGTGAGAAACTGGTAA
AATTATGATATTGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit