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Details




NbTI13D01

Annotation
Solyc04g012040.2.1;genomic_reference:SL2.50ch04 gene_region:4367412-4375553 transcript_region:SL2.50ch04:4367412..4375553+ functional_description:"26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "
ref|XP_009776187.1|;PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nicotiana sylvestris]
NbS00032888g0009.1;protein AED:0.20 eAED:0.20 QI:0|1|1|1|0|0.33|3|421|101; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=2e-42) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=5e-44) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=7e-40) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc05g055640.2.1 (e_value=3e-45) genomic_reference:SL2.40ch05 gene_region:64354473-64356655 transcript_region:SL2.40ch05:64354473..64356655+ functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e ";
AT3G59540.1;| Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI13D01
TAGCAGATGAGGCAAGCTGGAGATGTCGCCGGAACTAGAAAAGCGGCTACAGATATTCTTCAGCTTTGCTTCGAAGCTCGCGCTTGGAGTACTTTAAACG
AACAGATTGTTCTCTTGTCTAAGCGCCGTGGTCAACTGAAACAGGCTGTACAGGCCATGGTCCAACAAGCAATGCAGTATATTGACCAGACACCAGATCT
TGAAACTAAGATAGAACTCATCAAGACGCTTAACAATGTGTCTGCGGGAAAGATATATGTCGAAATTGAGAGAGCTCCCTCTCTTTTACTCGCCGTCGTC
TCCTCCTCAGCGCTACTTGAAACCCCAACAATGCCGAAGCAAATCCACGAGATCAAGGATTTCCTTCTCACAGCCAGAAGAAAGGATGCACGAACTGTCA
AGATCAAGAAGAACAAGGATATGGTCAAGTTCAAGGTTCGCTGTTCCAAGTACCTTTACACACTCTGTGTGTCTGACTTTGAGAAGGCTGACAAGTTGAA
GCAGTCACTTCCTCCAGGTTTGAGCGTGCAAGACCTGTGAAGAAGGATTTATGCTTTTCATAGAGTTATTAGGGAATGAAGAATTTGAAAGAACTCAAAT
ATTTCCTTTGAATATCTTGCCCTCAGGCATGTCTGAAGTTTTATTTAAGTTTTTAGATATTGATTGTTGCATTACTTTTTACTCATATGACAGTAGTGAG
TGAGCCTCAATGGTGCCGAATGAATTTTGTTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit