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Details




NbTI13F06

Annotation
Solyc03g114920.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch03 gene_region:58835298-58836866 transcript_region:SL2.50ch03:58835298..58836866- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
ref|XP_009606718.1|;PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nicotiana tomentosiformis]
NbS00000374g0001.1;protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|471; (*GB) gi|359491363|ref|XP_002265397.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g60960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FME4|PP438_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1;; (*TAIR) AT5G60960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24528423-24529988 REVERSE LENGTH=521;; (*ITAG) Solyc03g114920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58835298-58836866 transcript_region:SL2.40ch03:58835298..58836866- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat ";
AT5G60960.1;| Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24528423-24529988 REVERSE LENGTH=521
GO ID (Nr annotation)
GO:0005634 GO:0005739 GO:0003723 GO:0044763
GO ID (Arabidopsis annotation)
GO:0003676 GO:0046872 GO:0006259 GO:0007213 GO:0032501
GO ID (Tomato annotation)
GO:0005615 GO:0043231 GO:0044444 GO:0005515 GO:0010033 GO:0031323 GO:0034641 GO:0042558 GO:0044699 GO:0048522 GO:0048523 GO:0080090
GO ID (Niben annotation)
GO:0005743 GO:0005874 GO:0070469 GO:0003924 GO:0005200 GO:0005525 GO:0007017 GO:0008152
Sequence
>NbTI13F06
TCCATTTCGGCTTCAATCCGAGGCAGAGAATGTGTTGGTGGAAATGGAAGAGAAGGGTGTTCCTAGAGATGTGGAAACCTTTAATGTGTTGATCACTAAC
TTGTGTAAGATCAGGAAAACAGAGGATGCTATGAATCTGTTTTATAGAATGGGGCAATGGGGTTGTTCTCCAGATGAGACGACTTTTTTGACACTTATTA
AGAGCTTGTACCAGGCTGCAAGGATTGGAGAGGGTGACGAAATGATTGATAGAATGAAATCTGCGGGTTTTGGGAATGCACTTGATAAGAAGGCGTATTA
TGAATTTTTGAAAATATTATGTGGGATTGAGAGAATTGATCATGCTATGACTGTCTTTGCAAAGATGAAAGAGGATGGTCGCAAACCGGGGTTAAAGACT
TATGATTTGTTGATGGGAAAGCTGGTTACTCATAATCGTGTTGACAAAGCAAATGCTCTTTACAAGGAAGCTGAGAACAATGGATTGCCAGTTGAGCCAA
AGGCCTATATGGTGCATCCTAGATATGCAAAGAAGAAACCGACATCTGTGAAGAAGGAGAAGAAACGGGAGACACTGCCTGAGAAAATGGCTAGAAAGAG
GAGAAAGCTAAAGAAAATTCGCCTGAGTTTTGTGAAGAAACCTAGGAAAATGCAGCGCCGAGCATATAGATCCCTTTTGTATCTGATGATTTTAGAGGGT
TTTTCAAGTGGTATGCTGAAAAGTTTTCCCCCCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit