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Details




NbTI14A02

Annotation
Solyc08g083350.2.1;genomic_reference:SL2.50ch08 gene_region:62993669-62996264 transcript_region:SL2.50ch08:62993669..62996264+ functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B6U1J2_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "
ref|XP_009758554.1|;PREDICTED: 50S ribosomal protein L11, chloroplastic [Nicotiana sylvestris]
NbS00040004g0003.1;protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|0|218; (*SWP) sp|Q9MAP3|RK11_ARATH (e_value=1e-100) 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1;; (*TAIR) AT1G32990.1 (e_value=7e-102) | Symbols: PRPL11 | plastid ribosomal protein l11 | chr1:11955827-11957139 FORWARD LENGTH=222;; (*ITAG) Solyc08g083350.2.1 (e_value=1e-122) genomic_reference:SL2.40ch08 gene_region:62993669-62996264 transcript_region:SL2.40ch08:62993669..62996264+ functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B6U1J2_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type ";
AT1G32990.1;| Symbols: PRPL11 | plastid ribosomal protein l11 | chr1:11955827-11957139 FORWARD LENGTH=222
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI14A02
CCGGGATGCGTCTTTATCAACTTGTAATCATTCAGGGAAACTCTCTTCCTCGTTTTCACCTTCATCCCTCAATTTATCTTCATTCCAACGCGTCTCCGTT
CAGTTCATTCAAACCCACAACAAAAACACTTGTTCCCTTCCTTCCACTCCAAGGCCTCTCACTGTCATTTCCATGGCTCCCCCTAAGCCTGGCGGTGGTA
AAGCCAAGAAAGTGACTGGTATTATAAAGCTGGCTCTGGAGGCAGGGAAGGCAACACCGGCTCCACCTGTTGGGCCAGCCTTGGGTTCCAAGGGTGTTAA
CATTATGGCCTTTTGTAAGGATTACAACGCCAGAACTGCTGATAAAGCTGGTTATGTCATTCCCGTCGAAATCACCGTCTACGATGATAGAAGCTTCACT
TTTATCTTGAAGACCCCACCTGCTTCTGTTTTGCTGCTCAAGGCTGCAGGAGTGGAAAAAGGTTCAAAGGACCCACAGAGGGACAAAGTGGGGAAAATAA
CTATTGATCAATTGAAGACTATTGCTCAAGAGAAGTTGCCAGATCTTAATTGTACTACAATTGAATCTGCAATGAGGATTATTGCTGGCACTGCAGCAAA
TATGGGAATTGACATTGACACTCCAGTTCTTGAACCTAAAAAGAAAGAACTTATATACTAGTTTTGCCTTTTCCTATTACCATGTA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit