NbTI15B01
| Annotation |
|---|
| Solyc07g065630.2.1;genomic_reference:SL2.50ch07 gene_region:64541438-64557682 transcript_region:SL2.50ch07:64541438..64557682+ functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT " |
| ref|XP_010324249.1|;PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL1 [Solanum lycopersicum] |
| NbS00028351g0021.1;protein AED:0.24 eAED:0.25 QI:0|0.53|0.37|1|0.86|0.87|16|423|2126; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc07g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; |
| AT1G55860.2;| Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20892910 REVERSE LENGTH=3681 |
| GO ID (Nr annotation) |
|---|
| GO:0004842 |
| GO ID (Arabidopsis annotation) |
|---|
| GO:0004842 |
| GO ID (Tomato annotation) |
|---|
| GO:0004842 |
| GO ID (Niben annotation) |
|---|
| GO:0004842 |
| Sequence |
|---|
>NbTI15B01
TTCTGGCACCTCAGAGATTTCAGATTCACAAGGCTTATGGAGCTCCTGAGCGGCTTCCATCTGCACATACCTGCTTCAACCAACTTGACGTACCGGAGTA
TACTTCCAAGGAACAGCTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTCCCTTTTGCAGCTTC
CCCGAAAATTGCTTATATTTGATCATCCTGTGATTTTCATGTAAATACTGGCTGATCGACATCAACTGGACAACACAGATTGGGAGTCTGTTGCTTACAG
ATTTGAGTCTATATACAGCCTATCTTAAGGATGATGGAAGGATGACTGGGTAATTGCTACGCTTCGGTCATGTACATGGCAGTTTAGTATCTTCAAGTAG
GGGGTTATGCATTACGAGTGGTAATCTTCTTGCACAGTGGCGAGGAGCTCTGATTTTGTTGTTCCTTCCATTCCAAGACTCAAAAGTCACTCCGACAAAG
TTAGGTCACTGTGTAGATAAGTAACATATTTCATTTTCCATTTTCTGTTTGGAAGGGGACTCGGTGTGGGAGGTCTACATTTATTTTGGGTCTGGGGTAG
GTGCTAATTCATTCATGCTTTAGAATTTGATT
|
More analysis about the clones:
Nicotiana benthamiana resources at Boys Thomson InstituteTo find off target genes:
siRNA scanTo predict efficiency of siRNA:
pssRNAit
