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Details




NbTI15B09

Annotation
Solyc08g068810.2.1;genomic_reference:SL2.50ch08 gene_region:55121939-55124839 transcript_region:SL2.50ch08:55121939..55124839+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "
ref|XP_009797507.1|;PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Nicotiana sylvestris]
NbS00017071g0009.1;protein AED:0.14 eAED:0.15 QI:423|0.66|0.5|1|0.66|0.75|4|0|539; (*GB) gi|225430521|ref|XP_002283376.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=1e-153) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=1e-154) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 ";
AT5G10790.1;| Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557
GO ID (Nr annotation)
GO:0008270 GO:0036459 GO:0016579
GO ID (Arabidopsis annotation)
GO:0008270 GO:0036459 GO:0016579
GO ID (Tomato annotation)
GO:0008270 GO:0036459 GO:0016579
GO ID (Niben annotation)
GO:0008270 GO:0036459 GO:0016579
Sequence
>NbTI15B09
ATCTTGCAGATTACAAGGTAAAACATGGTTTGAGTGGGTATAGTTTGATGCAAGAATGTTTTAGGACAACGCCATATGGTAGGACCACATTAGAAATATC
CAAATCAGAGGTACCTAGATGTAGTATTTGTAGTGGATATGAGGGTAGATTTTACATGTGTTTGATCTGTTCATCAGTGCTATGTTGCTTGTCACCTGAG
TCAAACCATGCCCTTTTGCATAGTCAGTGTAAAGCTGGGCATGAGATTTCAATGGACATGGAAATGGCTGAGCTTTATTGCTCAGTGTGTTGTGATCAGG
TGTATGATCCTGATTTTGATAAGGTTGTCATGTGTAAACACATTATGGGGTTTTCAAGATCAGAAAATGGGGTAGTGGAGAGTGAGTTGAGGTTGAGCAA
GAGGAGAAGGTTGAGTTTTGGGATAGATTTTGATTCAAAGAATATGAAGACGTTGTTTTTAAGGAGGGATCAGAAGTCGAAATCGTGTTTTCCTTTAGGA
TTAAGGGGTTTGAACAATTTGGGGAATACTTGTTTCATGAACTCTGTGTTGCAAGTGTTACTTCATGCACCCCCTTTGAGAAATTACTTCCCTTAGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

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