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Details




NbTI15E01

Annotation
Solyc05g015350.2.1;genomic_reference:SL2.50ch05 gene_region:10425776-10430016 transcript_region:SL2.50ch05:10425776..10430016+ functional_description:"Cytochrome P450"
emb|CDP15252.1|;unnamed protein product [Coffea canephora]
NbS00009909g0011.1;protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|519; (*GB) gi|147777018|emb|CAN70074.1| (e_value=0.0) hypothetical protein VITISV_028565 [Vitis vinifera];; (*SWP) sp|O65012|C78A4_PINRA (e_value=4e-157) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT1G13710.1 (e_value=7e-169) | Symbols: CYP78A5, KLU | cytochrome P450, family 78, subfamily A, polypeptide 5 | chr1:4702932-4704592 REVERSE LENGTH=517;; (*ITAG) Solyc05g015350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10425776-10430016 transcript_region:SL2.40ch05:10425776..10430016+ functional_description:"Cytochrome P450";
AT2G46660.1;| Symbols: CYP78A6 | cytochrome P450, family 78, subfamily A, polypeptide 6 | chr2:19153602-19155417 REVERSE LENGTH=530
GO ID (Nr annotation)
GO:0005506 GO:0016705 GO:0020037 GO:0055114
GO ID (Arabidopsis annotation)
GO:0005506 GO:0016705 GO:0020037 GO:0055114
GO ID (Tomato annotation)
GO:0005506 GO:0016705 GO:0020037 GO:0055114
GO ID (Niben annotation)
GO:0005506 GO:0016705 GO:0020037 GO:0055114
Sequence
>NbTI15E01
CACTGCAACTTTTTGATCTTAATGTTTATATCAGCGCAGTGTACAGTACCCTTGTTTATTTAAAATGGGCTGTTATAATGTACGTATATTGTTGGTAGAA
TTAACACACAGTTCTTTAACAGGAAATGATCTTTCGGGGGACCGATACTGTGGCTATCCTGCTTGAGTGGATTCTTGCTAGGATGGTATTACATCCAGAT
ATTCAAGTCAGAGCTCAACGTGAAATTGACGCCGCTGTTGGAACTGATAGAGGGGTATGTGATTCTGATTTGCCTAATCTGCCATATCTTCAAGCCATAG
TGAAAGAGACTTTAAGAGTGCATCCGCCGGGTCCATTACTCTCATGGGCAAGGCTTGCAATTCATGACACTCACGTTGGTCAGCACTTAATCCCTGCTGG
AACTACAGCCATGGTCAACATGTGGGCTATTACTCATGACGAAAAGATTTGGTCACAACCAGAAGAGTTTATGCCAGGAAGGTTTTTGGAGGAAGAAGTA
GCTATTATGGGTTCTGATCATAGGCTTGCACCGTTCGGATCGGGAGGAGAGTGTGCCCGGGGAAAGCTATGGGACTAGCAACTGTTCAGCTTTGGTTGGC
TCAGTTACTTCAAGAATTCAAATGGGTTACTTCTGATAATGGTGTGGATTTGTCTGAGTGCCTGAAGTTGTCAATGGAAATGACTCACCCTTTGGTTTGC
AAGGCTGTTTCTAGGGTTCGTTGAAAGTATTTTTTGGTTGATTTGTACGGTTTTGGGATATTTTAATTTAGCCTATTATCTTCCTTGATCTCG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit