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Details




NbTI15G06

Annotation
Solyc04g080020.2.1;genomic_reference:SL2.50ch04 gene_region:61907518-61914553 transcript_region:SL2.50ch04:61907518..61914553+ functional_description:"Acyltransferase family protein (AHRD V1 ***- Q22SV8_TETTH); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "
ref|XP_009797367.1|;PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Nicotiana sylvestris]
NbS00050057g0017.1;protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|1|7|0|370; (*GB) gi|224137214|ref|XP_002327070.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BYI6|PCAT2_MOUSE (e_value=2e-33) Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus GN=Lpcat2 PE=1 SV=1;; (*TAIR) AT1G80950.1 (e_value=1e-161) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:30412653-30414935 REVERSE LENGTH=398;; (*ITAG) Solyc04g080020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61907518-61914553 transcript_region:SL2.40ch04:61907518..61914553+ functional_description:"Acyltransferase family protein (AHRD V1 ***- Q22SV8_TETTH); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase ";
AT1G80950.1;| Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:30412653-30414935 REVERSE LENGTH=398
GO ID (Nr annotation)
GO:0005634 GO:0005783 GO:0016021 GO:0050200 GO:0006644
GO ID (Arabidopsis annotation)
GO:0005765 GO:0016459 GO:0005509 GO:0008307 GO:0006936 GO:0006955 GO:0007519
GO ID (Tomato annotation)
GO:0005886 GO:0043005 GO:0044424 GO:0044425 GO:0001934 GO:0002029 GO:0006939 GO:0010840 GO:0010959 GO:0014061 GO:0030817 GO:0031623 GO:0032101 GO:0032496 GO:0042592 GO:0044703 GO:0044706 GO:0044707 GO:0045987 GO:0048545 GO:0048584 GO:0050878 GO:0051272 GO:0060455 GO:0071396 GO:1901654 GO:1901701 GO:1903034 GO:1903524 GO:1903531 GO:1904063
GO ID (Niben annotation)
Sequence
>NbTI15G06
TCGAATCACCTGACTTTAAAGGTGTCTCAGGTGTTGTAAATGAAAGGATTCATGAAGCTCACCAGAACAAATCTGCACCAATCATGCTGCTTTTTCCAGA
AGGGACAACCACAAATGGTGATTTTCTCCTTCCGTTCAAGTCTGGTGCATTTCTGTCAGGAGCTCCGGTGCAGCCTGTGATATTAAGATATCCATTCCAG
AGATTAAGTCCTGCGTGGGACTCGATATCTGGGGTTCGCCATGTGATTCTCCTTCTCTGTCAATTTGTAAATTATGTGGAGGCAACCTGGTTACCTGTTT
ACTACCCCTCTCGGCATGAAAAGGATGACCCTAGACTTTATGCTGAGAATGTCCGGAGGTTGATGGCTCATGAGGGTAATTTAATACTCTCAGATATTGG
CTTGGCAGAGAAGCGAGTATATCATGCTGCTCTCAATGGTAATAATAGCATGCCTACTGTTTTTCATCAGAAAGACGATTGATCATTTCATCGCCTGGAC
ACTGAAATGATAGCTAGTCCAAGATTGATACTAGTTGTGTTGTTTCTGAATATAATGACACAGTGGGGTTGTCCTCTCTACTATCTAAAATAAGAAAACT
TGGATGTTCTATCATACTTCTGTATCTTCATGTATCAAGAGTATCCTTTTTTGTTGAAAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit