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Details




NbTI15G08

Annotation
Solyc06g007710.2.1;genomic_reference:SL2.50ch06 gene_region:1692886-1704358 transcript_region:SL2.50ch06:1692886..1704358+ functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "
ref|XP_009766087.1|;PREDICTED: mitochondrial import receptor subunit TOM40-1-like [Nicotiana sylvestris]
NbS00015022g0008.1;protein AED:0.24 eAED:0.24 QI:213|1|1|1|0.83|0.69|13|372|312; (*GB) gi|225429234|ref|XP_002264051.1| (e_value=0.0) PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9LHE5|TO401_ARATH (e_value=2e-172) Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3;; (*TAIR) AT3G20000.1 (e_value=2e-173) | Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309;; (*ITAG) Solyc06g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1692886-1704358 transcript_region:SL2.40ch06:1692886..1704358+ functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type ";
AT3G20000.1;| Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309
GO ID (Nr annotation)
GO:0005742 GO:0015266 GO:0030150
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI15G08
ACTCTGTGATCTCTCTTCCCTCCGCGTAGCCGCAGTCAAGAAGAAGGAAATCACCTCCTTCTTCTTCATCTCATTTGTTATATTTATTTTCACTCAAGTC
TTACGCAGTTGGATCCAGACGCAGATCCTTACAATAATCTGCAATGGCCACTCTCATTCCTCCTTCAACCACTGTTCCTCCAGTTGGTTCCAAACTGGCG
GCTGTCGTACCAGAAAAAGTTGATTATTCGAACTTGCCTTGCCCTATTCCCTATGAAGAAATTCACCGCGAAGCTCTCATGTCTTTAAAGCCAGAACTTT
TTGAAGGATTGCGCTTTGATTTCACCAAAGGACTTAATCAGAGATTTTCACTCAGTCACAGTGTACTTATGGGCCCCACAGAACTTCCTTCTCAGTCTAC
AGAGACAATCAAAATTCCAACAGCTCACTATGAGTTTGGTGCTAACTTTATAGATCCGAAGCTGATGCTTTTCGGCAGAGTATTGACAGATGGAAGGGTT
AATGCTAGAGTGAAGTGTGATTTATCTGAGAATCTTACCTTGAAGGCGAATGGTCAGTTGACCGGCGAGCCACACATGTCGCAGGGCATGGTTAATTTCG
ACTACAGGGAAAAGATCACAGGTCCCAATTTCAACTTGGGAATGGTGCATTATTTGGAGCCAGCTACATCCAGAGTGTCACACCACATTTATCTCTGGGG
TGGGGAAGTATTCTGGGCTGGTCAGCACCGGAGATCTGGCATTGGTTATGCTGCTCGCTATAATACTGAC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit